Commit 506de0df authored by Rebecca E Batorsky's avatar Rebecca E Batorsky
Browse files

edit run script

parent be654783
......@@ -39,7 +39,6 @@ echo "Done Hifiber processing"
echo "------"
echo "Starting deletion consistency script, see log ${bn}_deletion.log"
#cd deletion/
python deletion/SDMMEJDeletionProgram_cli.py -hi ${hifi_reclass} -del ${deletion_out} -n $breakpoint -out $results_dir > ${results_dir}/${bn}_deletion.log
echo "------"
......@@ -49,7 +48,6 @@ echo "------"
echo "Starting insertion consistency script on insertions"
echo "------"
#cd ../insertion/
Rscript insertion/INSERTION_PROGRAM.R ${hifi_reclass} ${insertion_out} $results_dir $breakpoint $search_radius
echo "------"
......@@ -60,7 +58,6 @@ echo "------"
echo "Starting insertion consistency script on complex"
echo "------"
#cd ../insertion/
Rscript insertion/INSERTION_PROGRAM.R ${hifi_reclass} ${complex_out} $results_dir $breakpoint $search_radius
echo "------"
......
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