Commit b42244b0 authored by Rebecca E Batorsky's avatar Rebecca E Batorsky
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parent ec5485d6
......@@ -21,10 +21,9 @@ Example usage on test data:
`sh run_pipeline.sh test_data/polyA1Seq/PolyA1Seq_testdata.csv`
It generates output files in a directory `PolyA1Seq_testdata_output`
- Outputs from Hifibr processing script
It generates output files in a directory `PolyA1Seq_testdata_output` with the following output files
- Outputs from Hifibr processing script
`PolyA1Seq_testdata_reclassified.csv` Same format input, but adds an “ID” column as well as a column for how the sequence was reclassified
`PolyA1Seq_testdata_complex.txt` sequences that could not be reclassified as ins or del
`PolyA1Seq_testdata_insertion.txt` all ins sequences
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